Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.181
Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.PGX1 polygalacturonase
Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G10640 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Aop_g12304 | No alias | EC_3.2 glycosylase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0157.g053776 | No alias | EC_3.2 glycosylase & original description: CDS=175-1677 | 0.04 | OrthoFinder output from all 47 species | |
Gb_13356 | No alias | Probable polygalacturonase At1g80170 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os05g50260.1 | LOC_Os05g50260 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g28585 | No alias | EC_3.2 glycosylase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g17999 | No alias | EC_3.2 glycosylase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Smo111266 | ADPG2, PGAZAT | Polygalacturonase OS=Chamaecyparis obtusa | 0.04 | OrthoFinder output from all 47 species | |
Solyc07g015870.4.1 | Solyc07g015870 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e017465_P001 | Zm00001e017465 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e027720_P001 | Zm00001e027720 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004650 | polygalacturonase activity | IEA | Interproscan |
BP | GO:0005975 | carbohydrate metabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004180 | carboxypeptidase activity | IEP | HCCA |
MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | HCCA |
MF | GO:0004568 | chitinase activity | IEP | HCCA |
BP | GO:0006022 | aminoglycan metabolic process | IEP | HCCA |
BP | GO:0006026 | aminoglycan catabolic process | IEP | HCCA |
BP | GO:0006030 | chitin metabolic process | IEP | HCCA |
BP | GO:0006032 | chitin catabolic process | IEP | HCCA |
BP | GO:0006040 | amino sugar metabolic process | IEP | HCCA |
MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | HCCA |
MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0046348 | amino sugar catabolic process | IEP | HCCA |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | HCCA |
BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000743 | Glyco_hydro_28 | 102 | 417 |
No external refs found! |