AMTR_s00002p00255400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.393

No description available


Gene families : OG0000548 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00255400

Target Alias Description ECC score Gene Family Method Actions
AT5G10580 No alias Protein of unknown function, DUF599 0.04 OrthoFinder output from all 47 species
Ala_g21403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51507.t1 Aspi01Gene51507 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g043084 No alias not classified & original description: CDS=223-1053 0.04 OrthoFinder output from all 47 species
Azfi_s0359.g066863 No alias not classified & original description: CDS=223-915 0.03 OrthoFinder output from all 47 species
Azfi_s1197.g099364 No alias not classified & original description: CDS=1-918 0.02 OrthoFinder output from all 47 species
Dac_g40425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g00580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29757 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_09348 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_09350 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_19192 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_38231 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g19060.1 LOC_Os02g19060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g05770.1 LOC_Os08g05770 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g05780.1 LOC_Os08g05780 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g40940.1 LOC_Os08g40940 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g15780.1 LOC_Os09g15780 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os09g32100.1 LOC_Os09g32100 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g10869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g39352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19553 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004185 No alias not classified & original description: CDS=213-944 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023064 No alias not classified & original description: CDS=642-1325 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023071 No alias not classified & original description: CDS=695-1528 0.03 OrthoFinder output from all 47 species
Solyc03g079980.2.1 Solyc03g079980 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc10g074950.2.1 Solyc10g074950 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc12g096310.2.1 Solyc12g096310 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g20945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003584_P002 Zm00001e003584 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e020142_P001 Zm00001e020142 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003756 protein disulfide isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR006747 DUF599 10 228
No external refs found!