AMTR_s00002p00128010 (FSD2,...)

Aliases : FSD2, evm_27.TU.AmTr_v1.0_scaffold00002.85

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component

Gene families : OG0002805 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002805_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00128010

Target	Alias	Description	ECC score	Gene Family Method
Adi_g085978	ATFSD1, FSD1	iron superoxide dismutase *(FSD) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g77404	FSD2	iron superoxide dismutase *(FSD) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g05303	ATFSD1, FSD1	iron superoxide dismutase *(FSD) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013850001	FSD2	RNA biosynthesis.organelle machineries.RNA polymerase...	0.05	OrthoFinder output from all 47 species
GSVIVT01026137001	FSD3	RNA biosynthesis.organelle machineries.RNA polymerase...	0.04	OrthoFinder output from all 47 species
Mp7g14090.1	ATFSD1, FSD1	iron superoxide dismutase	0.08	OrthoFinder output from all 47 species
Pir_g04876	FSD2	cofactor of plastid-encoded RNA polymerase *(PAP9/FSD2)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004784	superoxide dismutase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006801	superoxide metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016209	antioxidant activity	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016882	cyclo-ligase activity	IEP	HCCA
MF	GO:0030272	5-formyltetrahydrofolate cyclo-ligase activity	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019831	Mn/Fe_SOD_N	22	107
IPR019832	Mn/Fe_SOD_C	171	232
IPR019832	Mn/Fe_SOD_C	112	164

External Links

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AMTR_s00002p00128010 (FSD2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation