Sequence Description Alias PCC hrr AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP2, evm_27.TU.AmTr_v1.0_scaffold00057.128 0.9243864314407557 7 AMTR_s00017p00235750 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase evm_27.TU.AmTr_v1.0_scaffold00017.195 0.9179244824463536 2 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9163266686899177 27 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 54CP, SRP54CP, CPSRP54, FFC, evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9148461501822992 46 AMTR_s00022p00249930 emb2738, evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9132275705834809 35 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease EGY1, evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9131712728170963 27 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9122736564348221 49 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9112152232224733 23 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.9092487324113632 9 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase ECHID, DHNS, evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9089436219141613 21 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH8, evm_27.TU.AmTr_v1.0_scaffold00175.11 0.9048358952473602 37 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor ATCFM2, CFM2, evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9048270953961676 63 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component V157, PDE166, ALB1, CHLD, ALB-1V, evm_27.TU.AmTr_v1.0_scaffold00053.100 0.9031213497655308 29 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.9018639062297495 44 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9016438317297042 40 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.8997443362052217 79 AMTR_s00032p00018130 Obg-like ATPase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.3 0.8988141185870485 69 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8986367980998823 66 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8985509200976873 34 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8961722830672866 86 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2, evm_27.TU.AmTr_v1.0_scaffold00089.48 0.8927281089519771 40 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8924733790490835 53 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8922728817639702 61 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.8916586474855962 29 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.8894716926929618 73 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.8872135228803532 88 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8860636089725967 44 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8851988966295957 64 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.8844219243197793 34 AMTR_s00062p00076280 Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GDC1, evm_27.TU.AmTr_v1.0_scaffold00062.49 0.8843069438545205 35 AMTR_s00032p00226710 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1, evm_27.TU.AmTr_v1.0_scaffold00032.243 0.8842348101047424 36 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2, evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8840877284805846 93 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.883630800403594 100 AMTR_s00032p00221170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst ATFKBP13, FKBP13, evm_27.TU.AmTr_v1.0_scaffold00032.228 0.882918001594893 39 AMTR_s00021p00119000 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component evm_27.TU.AmTr_v1.0_scaffold00021.66 0.8799663452907651 41 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.8799529680434623 54 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.8795236708785058 58 AMTR_s00039p00224840 evm_27.TU.AmTr_v1.0_scaffold00039.204 0.8790474257212482 45 AMTR_s00051p00066360 Cell cycle.regulation.cyclins.CYL1-type cyclin evm_27.TU.AmTr_v1.0_scaffold00051.24 0.8786967892147304 47 AMTR_s00002p00249620 Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica CPSAR1, EMB269, ATOBGC, evm_27.TU.AmTr_v1.0_scaffold00002.348 0.8783263773493128 48 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein AtCEST, CEST, evm_27.TU.AmTr_v1.0_scaffold00115.3 0.8773965578953693 50 AMTR_s00078p00021180 evm_27.TU.AmTr_v1.0_scaffold00078.3 0.876312028524451 51 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica ATNSI, NSI, evm_27.TU.AmTr_v1.0_scaffold00077.160 0.8752193155301808 55 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.8748236223614523 64 AMTR_s00092p00119050 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease HHOA, DEG5, DEGP5, evm_27.TU.AmTr_v1.0_scaffold00092.82 0.8741516366924021 56 AMTR_s00005p00062400 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.PRDA1 FSD2-interacting factor evm_27.TU.AmTr_v1.0_scaffold00005.9 0.8741084491895112 58 AMTR_s00032p00233500 Protein modification.phosphorylation.CMGC kinase superfamily.CLK/LAMMER kinase AFC1, AME2, FC1, evm_27.TU.AmTr_v1.0_scaffold00032.261 0.8740357496444495 82 AMTR_s00156p00076210 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL15 component RPL15, evm_27.TU.AmTr_v1.0_scaffold00156.37 0.8737287414460945 59 AMTR_s00001p00080980 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase HISN1B, ATATP-PRT2, ATP-PRT2, evm_27.TU.AmTr_v1.0_scaffold00001.55 0.8724451119601747 64 AMTR_s00024p00078360 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana ATMAP65-6, MAP65-6, evm_27.TU.AmTr_v1.0_scaffold00024.38 0.8717866392314073 68 AMTR_s00103p00070570 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor AtcpRRF, HFP108, cpRRF, RRF, evm_27.TU.AmTr_v1.0_scaffold00103.36 0.868807506418676 100 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase ATSEX4, ATPTPKIS1, DSP4, SEX4, evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8673692041585148 74 AMTR_s00019p00144790 evm_27.TU.AmTr_v1.0_scaffold00019.131 0.8672913301232474 75 AMTR_s00041p00195800 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP188 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00041.173 0.8657996441315043 76 AMTR_s00067p00113950 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component PTAC5, evm_27.TU.AmTr_v1.0_scaffold00067.91 0.8641526744211561 80 AMTR_s00024p00162030 Protein trichome birefringence OS=Arabidopsis thaliana TBR 0.860728576705437 85 AMTR_s00039p00224760 evm_27.TU.AmTr_v1.0_scaffold00039.203 0.860515592284064 86 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8600987191679247 89 AMTR_s00002p00146270 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana PDE318, evm_27.TU.AmTr_v1.0_scaffold00002.110 0.8592756772301436 97