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  5. AMTR_s00001p00272430

AMTR_s00001p00272430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.527

Description : Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00272430
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.03 OrthoFinder output from all 47 species
Ceric.12G078600.1 Ceric.12G078600 stability factor *(PPR10) & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.04 OrthoFinder output from all 47 species
Gb_13589 No alias plastidial mRNA processing factor (PPR10) 0.04 OrthoFinder output from all 47 species
LOC_Os07g40120.1 LOC_Os07g40120 plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.04 OrthoFinder output from all 47 species
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 OrthoFinder output from all 47 species
Spa_g11381 No alias stability factor *(PPR10) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 723 772
IPR002885 Pentatricopeptide_repeat 408 455
IPR002885 Pentatricopeptide_repeat 653 702
IPR002885 Pentatricopeptide_repeat 338 386
IPR002885 Pentatricopeptide_repeat 482 527
IPR002885 Pentatricopeptide_repeat 235 280
IPR002885 Pentatricopeptide_repeat 201 230
IPR002885 Pentatricopeptide_repeat 621 651
IPR002885 Pentatricopeptide_repeat 306 336
No external refs found!