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  5. Dac_g14855

Dac_g14855


Description : SSU processome assembly factor *(SOF1) & original description: none


Gene families : OG0004632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g14855

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020601001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
MA_95340g0010 No alias SSU processome assembly factor (SOF1) 0.02 OrthoFinder output from all 47 species
Mp5g11980.1 No alias SSU processome assembly factor (SOF1) 0.01 OrthoFinder output from all 47 species
Solyc07g053660.3.1 Solyc07g053660 SSU processome assembly factor (SOF1) 0.03 OrthoFinder output from all 47 species
Zm00001e006402_P001 Zm00001e006402 SSU processome assembly factor (SOF1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR007287 Sof1 358 444
IPR001680 WD40_repeat 62 95
IPR001680 WD40_repeat 282 313
IPR001680 WD40_repeat 325 357
IPR001680 WD40_repeat 103 137
No external refs found!