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  5. Dac_g12157

Dac_g12157


Description : mRNA helicase *(RH31) & original description: none


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g12157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00082420 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g059684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18916 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06941 No alias mRNA helicase *(RH31) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g11504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13231 No alias mRNA helicase *(RH31) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene05458.t1 Aspi01Gene05458 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011827 No alias mRNA helicase *(RH31) & original description: CDS=535-2991 0.04 OrthoFinder output from all 47 species
Ceric.27G031600.1 Ceric.27G031600 mRNA helicase *(RH31) & original description:... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020713.11 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 OrthoFinder output from all 47 species
Cre16.g661900 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dde_g19403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
LOC_Os01g43130.1 LOC_Os01g43130 DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os02g57980.1 LOC_Os02g57980 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_10432294g0010 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g10300 No alias mRNA helicase *(RH31) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01045 No alias mRNA helicase *(RH31) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020193 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13628 No alias mRNA helicase *(RH31) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g34517 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g12217 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12179 No alias mRNA helicase *(RH31) & original description: none 0.1 OrthoFinder output from all 47 species
Zm00001e016261_P001 Zm00001e016261 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e037076_P003 Zm00001e037076 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 571 680
IPR011545 DEAD/DEAH_box_helicase_dom 353 528
No external refs found!