Dac_g04101

Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g04101

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00219330	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AMTR_s00030p00157370	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT2G31610	No alias	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
AT5G35530	No alias	Ribosomal protein S3 family protein	0.03	OrthoFinder output from all 47 species
Aob_g22525	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g11605	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.06G062500.1	Ceric.06G062500	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021462.41	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Cre02.g102250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01016775001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01035451001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Gb_13623	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Gb_26539	No alias	component RPS3 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os03g38000.1	LOC_Os03g38000	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_10436283g0010	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_120861g0010	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Pp3c11_22640V3.1	Pp3c11_22640	Ribosomal protein S3 family protein	0.01	OrthoFinder output from all 47 species
Pp3c5_5330V3.1	Pp3c5_5330	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c7_2620V3.1	Pp3c7_2620	Ribosomal protein S3 family protein	0.01	OrthoFinder output from all 47 species
Smo438700	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Solyc07g041310.3.1	Solyc07g041310	component RPS3 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc08g061843.1.1	Solyc08g061843	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species
Spa_g10670	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g21286	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g30478	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g54393	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g04971	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e040177_P002	Zm00001e040177	component RPS3 of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0008303	caspase complex	IEP	HCCA
BP	GO:0016255	attachment of GPI anchor to protein	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0042765	GPI-anchor transamidase complex	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	21	94
IPR001351	Ribosomal_S3_C	107	189

External Links

No external refs found!

Dac_g04101

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation