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  5. Dac_g00398

Dac_g00398


Description : component *(bL28c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006464 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g00398

Target Alias Description ECC score Gene Family Method Actions
Aev_g02708 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Als_g54254 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g09499 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Azfi_s0087.g042281 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.06G041500.1 Ceric.06G041500 component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre06.g265800 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Ehy_g00252 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01027870001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Gb_39628 No alias component psRPL28 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os05g01110.1 LOC_Os05g01110 component psRPL28 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Len_g11369 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
MA_10426581g0010 No alias component psRPL28 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Mp4g05120.1 No alias component psRPL28 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Ore_g11040 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g58585 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pnu_g09843 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pp3c6_1140V3.1 Pp3c6_1140 Ribosomal L28 family 0.01 OrthoFinder output from all 47 species
Sam_g23667 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc09g090410.3.1 Solyc09g090410 component psRPL28 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Tin_g00322 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Zm00001e004728_P001 Zm00001e004728 component psRPL28 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034311 diol metabolic process IEP HCCA
BP GO:0034312 diol biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046146 tetrahydrobiopterin metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 47 105
No external refs found!