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  5. Cre17.g745547

Cre17.g745547


No description available


Gene families : OG0001918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001918_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g745547
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00171490 FIP1[V],... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 OrthoFinder output from all 47 species
AT5G58040 FIP1[V],... homolog of yeast FIP1 [V] 0.06 OrthoFinder output from all 47 species
Adi_g085831 FIP1[V],... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g14836 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ala_g13981 FIP1[V],... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g20998 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Als_g05760 FIP1[V],... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19308 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Als_g26693 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Aob_g26393 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Aop_g02263 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g25811 FIP1[V],... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene22579.t1 Aspi01Gene22579 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0466.g072792 No alias not classified & original description: CDS=1-477 0.01 OrthoFinder output from all 47 species
Cba_g04743 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G051000.1 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021312.38 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g10619 FIP1[V],... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g17315 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Ehy_g18049 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023597001 FIP1[V],... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
GSVIVT01034996001 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_32960 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
LOC_Os03g19570.1 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g51520.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Len_g17376 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Lfl_g24352 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Mp5g14310.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Msp_g26626 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Nbi_g22123 FIP1[V],... substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Ore_g43037 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Pir_g30495 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ppi_g03287 FIP1[V],... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g35738 No alias component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Smo441074 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc07g005320.3.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Spa_g04885 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Spa_g15696 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Tin_g02197 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Zm00001e001458_P002 FIP1[V],... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR007854 Fip1_dom 337 380
No external refs found!