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  5. Cre16.g659950

Cre16.g659950


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS5 component


Gene families : OG0006947 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g659950

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00160p00027870 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
AT2G33800 No alias Ribosomal protein S5 family protein 0.16 OrthoFinder output from all 47 species
Adi_g042973 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aev_g08558 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g09860 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g01160 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g08706 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Aspi01Gene14983.t1 Aspi01Gene14983 component *(uS5c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Azfi_s0164.g054257 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cba_g08130 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.31G051100.1 Ceric.31G051100 component *(uS5c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Dac_g09182 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g02392 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dde_g01276 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ehy_g02229 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01021083001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Gb_10529 No alias component psRPS5 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
LOC_Os03g34040.1 LOC_Os03g34040 component psRPS5 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g06036 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Lfl_g06469 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_10435489g0010 No alias component psRPS5 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
MA_10435489g0020 No alias component psRPS5 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Mp8g10330.1 No alias component psRPS5 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
Msp_g10187 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Nbi_g03405 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ore_g26045 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ore_g26046 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Pir_g02168 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pnu_g00429 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Ppi_g02748 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000229 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sam_g15053 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc02g077990.3.1 Solyc02g077990 component psRPS5 of small ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
Spa_g00297 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Tin_g14998 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Zm00001e004331_P004 Zm00001e004331 component psRPS5 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 513 577
IPR005324 Ribosomal_S5_C 590 660
No external refs found!