- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Amino acid metabolism.biosynthesis.shikimate family.tryptophan.indole-3-glycerol phosphate synthase
Gene families : OG0004545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004545_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre13.g602350 | |
| Cluster | HCCA: Cluster_28 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G48220 | No alias | Aldolase-type TIM barrel family protein | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g09392 | No alias | indole-3-glycerol phosphate synthase & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Gb_29446 | No alias | indole-3-glycerol phosphate synthase | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os04g39270.1 | LOC_Os04g39270 | indole-3-glycerol phosphate synthase | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g25926 | No alias | indole-3-glycerol phosphate synthase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g09449 | No alias | indole-3-glycerol phosphate synthase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0157.g023709 | No alias | indole-3-glycerol phosphate synthase & original... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004425 | indole-3-glycerol-phosphate synthase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0008104 | protein localization | IEP | HCCA |
| MF | GO:0008565 | obsolete protein transporter activity | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013798 | Indole-3-glycerol_P_synth_dom | 72 | 337 |
| No external refs found! |