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  5. Cre09.g394750

Cre09.g394750 (RPS1, ARRPS1)


Aliases : RPS1, ARRPS1

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component


Gene families : OG0002574 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g394750

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00212290 RPS1, ARRPS1,... Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
AT5G30510 RPS1, ARRPS1 ribosomal protein S1 0.1 OrthoFinder output from all 47 species
Adi_g033757 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g01963 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g07823 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Als_g32395 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Aob_g17787 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g12017 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g41967 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aspi01Gene13361.t1 RPS1, ARRPS1,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene13364.t1 RPS1, ARRPS1,... component *(bS1c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Aspi01Gene46819.t1 RPS1, ARRPS1,... component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024427 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cba_g16776 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cba_g16777 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.32G044800.1 RPS1, ARRPS1,... component *(bS1c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.13 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Dac_g12960 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g08135 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g07822 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g01340 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01034940001 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Gb_02217 RPS1, ARRPS1 component psRPS1 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os03g20100.1 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Len_g02246 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Lfl_g03066 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_694512g0010 RPS1, ARRPS1 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.04 OrthoFinder output from all 47 species
Msp_g22203 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g09544 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g07549 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pir_g10266 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pnu_g11886 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c10_21790V3.1 RPS1, ARRPS1,... ribosomal protein S1 0.05 OrthoFinder output from all 47 species
Ppi_g02011 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ppi_g05695 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017184 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025569 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g07761 No alias component *(bS1c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Sam_g09837 No alias component *(bS1c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Smo271018 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Solyc01g057830.3.1 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Spa_g01530 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Spa_g07743 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Tin_g04575 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e038288_P002 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 309 379
IPR003029 S1_domain 228 295
IPR003029 S1_domain 138 208
No external refs found!