Cre03.g158750

Description : DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana

Gene families : OG0007895 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007895_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g158750

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00105110	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Adi_g023642	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g04365	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0096.g043709	No alias	not classified & original description: CDS=407-1939	0.03	OrthoFinder output from all 47 species
Ceric.03G033000.1	Ceric.03G033000	not classified & original description: pacid=50571877...	0.04	OrthoFinder output from all 47 species
Lfl_g09541	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018301	No alias	not classified & original description: CDS=43-1596	0.01	OrthoFinder output from all 47 species
Smo75384	No alias	DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Tin_g07419	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019107	myristoyltransferase activity	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	145	318
IPR001650	Helicase_C	378	470

External Links

No external refs found!