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  5. GSVIVT01034651001

GSVIVT01034651001


Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034651001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00239430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
AT5G04810 No alias pentatricopeptide (PPR) repeat-containing protein 0.07 OrthoFinder output from all 47 species
Adi_g059076 No alias trans-splicing factor *(PPR4) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g42769 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06743 No alias trans-splicing factor *(PPR4) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g11599 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11518 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10932.t1 Aspi01Gene10932 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0073.g037201 No alias trans-splicing factor *(PPR4) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.23G051700.1 Ceric.23G051700 trans-splicing factor *(PPR4) & original description:... 0.09 OrthoFinder output from all 47 species
Dcu_g11762 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_31760 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.04 OrthoFinder output from all 47 species
LOC_Os04g58780.1 LOC_Os04g58780 Pentatricopeptide repeat-containing protein At5g04810,... 0.04 OrthoFinder output from all 47 species
MA_10434757g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.08 OrthoFinder output from all 47 species
Mp1g25160.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Msp_g06326 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26176 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04509 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08436 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30415 No alias trans-splicing factor *(PPR4) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015580 No alias trans-splicing factor *(PPR4) & original description: CDS=47-2710 0.02 OrthoFinder output from all 47 species
Solyc04g009720.1.1 Solyc04g009720 Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Solyc04g009730.4.1 Solyc04g009730 Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.12 OrthoFinder output from all 47 species
Zm00001e041970_P002 Zm00001e041970 Pentatricopeptide repeat-containing protein At5g04810,... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 292 348
IPR002885 Pentatricopeptide_repeat 500 554
IPR002885 Pentatricopeptide_repeat 375 404
IPR002885 Pentatricopeptide_repeat 410 439
IPR002885 Pentatricopeptide_repeat 648 680
IPR000504 RRM_dom 149 193
IPR002885 Pentatricopeptide_repeat 756 803
IPR002885 Pentatricopeptide_repeat 581 629
IPR002885 Pentatricopeptide_repeat 441 489
IPR002885 Pentatricopeptide_repeat 687 735
No external refs found!