GSVIVT01032383001

Description : RNA processing.RNA modification.pseudouridylation.TruB-type tRNA pseudouridine synthase

Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01032383001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00225390	evm_27.TU.AmTr_v1...	RNA processing.RNA...	0.06	OrthoFinder output from all 47 species
AT5G14460	No alias	Pseudouridine synthase family protein	0.08	OrthoFinder output from all 47 species
Ala_g09240	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031272	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Cba_g23041	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Ceric.07G028400.1	Ceric.07G028400	TruB-type tRNA pseudouridine synthase & original...	0.05	OrthoFinder output from all 47 species
Dac_g11405	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Dcu_g21012	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
LOC_Os05g01750.1	LOC_Os05g01750	tRNA pseudouridine synthase (TruB)	0.03	OrthoFinder output from all 47 species
Len_g31733	No alias	TruB-type tRNA pseudouridine synthase & original...	0.05	OrthoFinder output from all 47 species
Lfl_g34116	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Nbi_g34525	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ore_g25312	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Ore_g35846	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Sam_g26745	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Smo75554	No alias	RNA processing.RNA...	0.05	OrthoFinder output from all 47 species
Solyc02g093460.4.1	Solyc02g093460	tRNA pseudouridine synthase (TruB)	0.06	OrthoFinder output from all 47 species
Spa_g51764	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Zm00001e029672_P001	Zm00001e029672	tRNA pseudouridine synthase (TruB)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002501	PsdUridine_synth_N	304	454
IPR032819	TruB_C	455	498

External Links

No external refs found!

GSVIVT01032383001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation