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  5. GSVIVT01031538001

GSVIVT01031538001


Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031538001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.05 OrthoFinder output from all 47 species
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.04 OrthoFinder output from all 47 species
Adi_g073356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G049200.1 Ceric.26G049200 not classified & original description: pacid=50600373... 0.04 OrthoFinder output from all 47 species
Dcu_g39714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02803 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g21160.2 LOC_Os03g21160 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species
Len_g23449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37038 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Smo439924 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
Solyc01g008600.4.1 Solyc01g008600 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Solyc11g065320.2.1 Solyc11g065320 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Spa_g27908 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e001546_P001 Zm00001e001546 C3H zinc finger transcription factor 0.09 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
Zm00001e038256_P001 Zm00001e038256 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP HCCA
BP GO:0009245 lipid A biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046493 lipid A metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901269 lipooligosaccharide metabolic process IEP HCCA
BP GO:1901271 lipooligosaccharide biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 147 167
IPR000504 RRM_dom 285 330
No external refs found!