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  5. GSVIVT01030019001

GSVIVT01030019001


No description available


Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01030019001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AT3G07850 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G14040 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.04 OrthoFinder output from all 47 species
GSVIVT01030020001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.03 OrthoFinder output from all 47 species
LOC_Os06g35320.1 LOC_Os06g35320 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030524_P001 Zm00001e030524 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e030529_P001 Zm00001e030529 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!