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  5. GSVIVT01027972001

GSVIVT01027972001 (LPA1)


Aliases : LPA1

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein


Gene families : OG0007503 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01027972001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00200960 LPA1,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Aob_g07881 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.05 OrthoFinder output from all 47 species
Aop_g04570 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene55401.t1 LPA1, Aspi01Gene55401 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0301.g063734 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.05 OrthoFinder output from all 47 species
Ceric.1Z061600.1 LPA1, Ceric.1Z061600 protein involved in PS-II assembly *(LPA1) & original... 0.07 OrthoFinder output from all 47 species
Cre10.g430150 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Dac_g17911 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g02841 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.05 OrthoFinder output from all 47 species
Dde_g06132 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g15605 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os01g25600.1 LPA1, LOC_Os01g25600 LPA1 protein involved in PS-II assembly 0.15 OrthoFinder output from all 47 species
Len_g00549 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g03930 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.07 OrthoFinder output from all 47 species
MA_10428940g0010 LPA1 Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.04 OrthoFinder output from all 47 species
MA_8804338g0010 LPA1 Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.07 OrthoFinder output from all 47 species
Mp1g21960.1 LPA1 LPA1 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
Ore_g20376 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.08 OrthoFinder output from all 47 species
Pnu_g08072 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g33137 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017935 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g14405 No alias protein involved in PS-II assembly *(LPA1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g50149 No alias protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Smo134250 LPA1 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Spa_g09685 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e017629_P003 LPA1, Zm00001e017629 LPA1 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021883 LPA1-like 166 243
No external refs found!