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  5. GSVIVT01025042001

GSVIVT01025042001


Description : Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001684 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001684_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025042001

Target Alias Description ECC score Gene Family Method Actions
AT5G59750 No alias DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II 0.05 OrthoFinder output from all 47 species
Ala_g14925 GCH, ATGCH, RFD1, ATRIBA1 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Aob_g01957 GCH, ATGCH, RFD1, ATRIBA1 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Gb_31656 GCH, ATGCH, RFD1, ATRIBA1 bifunctional GTP cyclohydrolase II (RibA) and DHBP... 0.05 OrthoFinder output from all 47 species
LOC_Os05g38570.1 LOC_Os05g38570 Probable monofunctional riboflavin biosynthesis protein... 0.04 OrthoFinder output from all 47 species
Msp_g20070 GCH, ATGCH, RFD1, ATRIBA1 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Nbi_g04325 GCH, ATGCH, RFD1, ATRIBA1 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.06 OrthoFinder output from all 47 species
Ore_g07401 GCH, ATGCH, RFD1, ATRIBA1 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Solyc01g105560.3.1 GCH, ATGCH,... bifunctional GTP cyclohydrolase II (RibA) and DHBP... 0.04 OrthoFinder output from all 47 species
Solyc11g010300.2.1 GCH, ATGCH,... bifunctional GTP cyclohydrolase II (RibA) and DHBP... 0.03 OrthoFinder output from all 47 species
Solyc11g073160.3.1 Solyc11g073160 Monofunctional riboflavin biosynthesis protein RIBA 3,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEA Interproscan
BP GO:0009231 riboflavin biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000422 DHBP_synthase_RibB 120 314
IPR032677 GTP_cyclohydro_II 327 490
No external refs found!