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  5. GSVIVT01024860001

GSVIVT01024860001 (RPOA)


Aliases : RPOA

Description : DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera


Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024860001
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
ATCG00740 RPOA RNA polymerase subunit alpha 0.08 OrthoFinder output from all 47 species
Aev_g02093 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.09 OrthoFinder output from all 47 species
Cba_g60899 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.03 OrthoFinder output from all 47 species
Ceric.05G041900.1 RPOA, Ceric.05G041900 core component *(RpoA) of plastid-encoded RNA polymerase... 0.08 OrthoFinder output from all 47 species
Ceric.38G008600.1 RPOA, Ceric.38G008600 core component *(RpoA) of plastid-encoded RNA polymerase... 0.09 OrthoFinder output from all 47 species
LOC_Os04g16842.1 RPOA, LOC_Os04g16842 RpoA core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
LOC_Os06g39700.1 RPOA, LOC_Os06g39700 RpoA core component plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os09g07910.1 RPOA, LOC_Os09g07910 DNA-directed RNA polymerase subunit alpha OS=Oryza... 0.04 OrthoFinder output from all 47 species
Lfl_g19118 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.04 OrthoFinder output from all 47 species
Mpzg00720.1 RPOA RpoA core component plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Nbi_g19365 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.03 OrthoFinder output from all 47 species
Pir_g12462 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.07 OrthoFinder output from all 47 species
Sam_g01699 No alias core component *(RpoA) of plastid-encoded RNA polymerase... 0.03 OrthoFinder output from all 47 species
Solyc00g500029.1.1 RPOA, Solyc00g500029 DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.04 OrthoFinder output from all 47 species
Solyc00g500074.1.1 RPOA, Solyc00g500074 DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.04 OrthoFinder output from all 47 species
Solyc00g500157.1.1 RPOA, Solyc00g500157 RpoA core component plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Solyc01g017440.1.1 RPOA, Solyc01g017440 DNA-directed RNA polymerase subunit alpha OS=Solanum... 0.05 OrthoFinder output from all 47 species
Tin_g20913 RPOA core component *(RpoA) of plastid-encoded RNA polymerase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!