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  5. GSVIVT01023886001

GSVIVT01023886001


Description : External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.NIN transcription factor


Gene families : OG0000692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023886001

Target Alias Description ECC score Gene Family Method Actions
AT4G24020 NLP7 NIN like protein 7 0.03 OrthoFinder output from all 47 species
Adi_g057867 No alias transcription factor *(NIN) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02678 No alias transcription factor *(NIN) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G013900.1 Ceric.11G013900 transcription factor *(NIN) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G019500.1 Ceric.21G019500 transcription factor *(NIN) & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g23136 No alias transcription factor *(NIN) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08607 No alias transcription factor *(NIN) & original description: none 0.03 OrthoFinder output from all 47 species
MA_18336g0010 No alias transcription factor (NLP) 0.03 OrthoFinder output from all 47 species
Nbi_g05467 NLP7 transcription factor *(NIN) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13630 No alias transcription factor *(NIN) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g082750.3.1 NLP7, Solyc08g082750 transcription factor (NLP). NLP6/7 nitrate response... 0.03 OrthoFinder output from all 47 species
Solyc11g045350.2.1 Solyc11g045350 transcription factor (NLP). transcription factor (NIN) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003035 RWP-RK_dom 566 614
IPR000270 PB1_dom 723 804
No external refs found!