GSVIVT01020137001 (ISE2, PDE317, EMB25)

Aliases : ISE2, PDE317, EMB25

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase

Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01020137001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00090p00178540	ISE2, PDE317,...	RNA processing.organelle machineries.RNA...	0.07	OrthoFinder output from all 47 species
AT1G70070	ISE2, PDE317, EMB25	DEAD/DEAH box helicase, putative	0.09	OrthoFinder output from all 47 species
Ala_g22694	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.06	OrthoFinder output from all 47 species
Aop_g13240	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene32646.t1	ISE2, PDE317,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g007647	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.05	OrthoFinder output from all 47 species
Cba_g14553	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.02	OrthoFinder output from all 47 species
Ceric.18G021200.1	ISE2, PDE317,...	group-II intron splicing RNA helicase *(ISE2) & original...	0.08	OrthoFinder output from all 47 species
Dcu_g20011	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Dde_g08182	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
LOC_Os02g50560.1	ISE2, PDE317,...	RNA helicase (ISE2)	0.08	OrthoFinder output from all 47 species
Len_g22559	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g12767	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
MA_10437000g0020	ISE2, PDE317, EMB25	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic...	0.05	OrthoFinder output from all 47 species
MA_1283g0010	ISE2, PDE317, EMB25	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic...	0.03	OrthoFinder output from all 47 species
Mp4g01470.1	ISE2, PDE317, EMB25	RNA helicase (ISE2)	0.03	OrthoFinder output from all 47 species
Nbi_g18791	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.04	OrthoFinder output from all 47 species
Ore_g19053	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g08266	ISE2, PDE317, EMB25	group-II intron splicing RNA helicase *(ISE2) & original...	0.07	OrthoFinder output from all 47 species
Sam_g07224	No alias	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Smo440019	ISE2, PDE317, EMB25	Protein modification.phosphorylation.TKL kinase...	0.04	OrthoFinder output from all 47 species
Solyc05g006530.4.1	ISE2, PDE317,...	RNA helicase (ISE2)	0.08	OrthoFinder output from all 47 species
Zm00001e015769_P001	ISE2, PDE317,...	RNA helicase (ISE2)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	50	202
IPR012961	Ski2/MTR4_C	895	1059

External Links

No external refs found!

GSVIVT01020137001 (ISE2, PDE317, EMB25)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation