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Description : Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica
Gene families : OG0001572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001572_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01019663001 | |
| Cluster | HCCA: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00018p00255680 | evm_27.TU.AmTr_v1... | Beta-carotene isomerase D27, chloroplastic... | 0.04 | OrthoFinder output from all 47 species | |
| AT1G64680 | No alias | unknown protein; BEST Arabidopsis thaliana protein match... | 0.08 | OrthoFinder output from all 47 species | |
| Adi_g033681 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g02991 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g49501 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06641 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g11103 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g31538 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g13955 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g19690 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g13831 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g12391 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Gb_18729 | No alias | carotenoid isomerase (DWARF27) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g02210.2 | LOC_Os08g02210 | Beta-carotene isomerase D27, chloroplastic... | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g11491 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g13325 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_167711g0010 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g11577 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Nbi_g26733 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g09860 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19910 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g09207 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Pnu_g26521 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ppi_g62487 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g06073 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc08g008630.4.1 | Solyc08g008630 | Beta-carotene isomerase D27, chloroplastic OS=Oryza... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g05404 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g28773 | No alias | carotenoid isomerase *(DWARF27) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e029191_P001 | Zm00001e029191 | Beta-carotene isomerase D27, chloroplastic... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0009056 | catabolic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| MF | GO:0016829 | lyase activity | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| BP | GO:0019725 | cellular homeostasis | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0042592 | homeostatic process | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0045454 | cell redox homeostasis | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| MF | GO:0071949 | FAD binding | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR025114 | D27-like_C | 47 | 129 |
| No external refs found! |