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  5. GSVIVT01016344001

GSVIVT01016344001


Description : Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana


Gene families : OG0000954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000954_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016344001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00210830 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G27650 No alias Tudor/PWWP/MBT superfamily protein 0.1 OrthoFinder output from all 47 species
AT5G40340 No alias Tudor/PWWP/MBT superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g034638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060541 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g113339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04183 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33310 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g17586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g64510 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0064.g035473 No alias not classified & original description: CDS=1-4050 0.02 OrthoFinder output from all 47 species
Cba_g07712 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g14356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g22385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G017200.1 Ceric.03G017200 not classified & original description: pacid=50571554... 0.04 OrthoFinder output from all 47 species
Ceric.04G099500.1 Ceric.04G099500 not classified & original description: pacid=50631612... 0.03 OrthoFinder output from all 47 species
Ceric.24G040200.1 Ceric.24G040200 not classified & original description: pacid=50630010... 0.04 OrthoFinder output from all 47 species
Ceric.29G059500.1 Ceric.29G059500 N-methyltransferase component *(ATX3/4/5) of COMPASS... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.25 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre06.g270700 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g06515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_18977 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_40891 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os05g38800.2 LOC_Os05g38800 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g38810.1 LOC_Os05g38810 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os11g19810.1 LOC_Os11g19810 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g20479 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g24154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10171844g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10197194g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_10434021g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_8546g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Msp_g20276 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g43747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g14266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16152 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g28169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06451 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g06983 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g22851 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g02419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001848 No alias not classified & original description: CDS=1-3909 0.03 OrthoFinder output from all 47 species
Sam_g14247 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g30404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g099360.3.1 Solyc01g099360 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc02g086750.3.1 Solyc02g086750 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g31146 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g40244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027258_P002 Zm00001e027258 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e031849_P002 Zm00001e031849 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 891 977
No external refs found!