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Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana
Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01012774001 | |
| Cluster | HCCA: Cluster_75 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00061p00202160 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g55840... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G11710 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G01110 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G55840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G59900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018339001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.01 | OrthoFinder output from all 47 species | |
| Gb_05519 | No alias | Pentatricopeptide repeat-containing protein At5g01110... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os06g36910.1 | LOC_Os06g36910 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| MA_111225g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| MA_299481g0010 | EMB2745 | Pentatricopeptide repeat-containing protein At5g39710... | 0.03 | OrthoFinder output from all 47 species | |
| MA_302333g0010 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.02 | OrthoFinder output from all 47 species | |
| MA_59385g0010 | No alias | Pentatricopeptide repeat-containing protein At3g54980,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_6175g0010 | No alias | Pentatricopeptide repeat-containing protein At5g01110... | 0.02 | OrthoFinder output from all 47 species | |
| MA_64750g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc01g108410.3.1 | EMB2745, Solyc01g108410 | Pentatricopeptide repeat-containing protein At5g39710... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc02g021270.3.1 | Solyc02g021270 | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g007390.4.1 | Solyc03g007390 | Pentatricopeptide repeat-containing protein At5g40400... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g073270.1.1 | Solyc11g073270 | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | HCCA |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | HCCA |
| BP | GO:0006310 | DNA recombination | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 640 | 689 |
| IPR002885 | Pentatricopeptide_repeat | 464 | 513 |
| IPR002885 | Pentatricopeptide_repeat | 863 | 908 |
| IPR002885 | Pentatricopeptide_repeat | 196 | 244 |
| IPR002885 | Pentatricopeptide_repeat | 535 | 583 |
| IPR002885 | Pentatricopeptide_repeat | 266 | 315 |
| IPR002885 | Pentatricopeptide_repeat | 336 | 380 |
| IPR002885 | Pentatricopeptide_repeat | 798 | 823 |
| IPR002885 | Pentatricopeptide_repeat | 166 | 187 |
| IPR002885 | Pentatricopeptide_repeat | 714 | 740 |
| IPR002885 | Pentatricopeptide_repeat | 831 | 859 |
| IPR002885 | Pentatricopeptide_repeat | 426 | 457 |
| IPR002885 | Pentatricopeptide_repeat | 603 | 633 |
| IPR002885 | Pentatricopeptide_repeat | 762 | 786 |
| No external refs found! |