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  5. GSVIVT01010007001

GSVIVT01010007001 (SCL1)


Aliases : SCL1

Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010007001
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00136400 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.08 OrthoFinder output from all 47 species
AMTR_s00088p00161000 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.09 OrthoFinder output from all 47 species
AMTR_s00186p00018500 SCL1,... RNA biosynthesis.transcriptional activation.GRAS... 0.07 OrthoFinder output from all 47 species
AT1G21450 SCL1 SCARECROW-like 1 0.06 OrthoFinder output from all 47 species
AT1G50600 SCL5 scarecrow-like 5 0.05 OrthoFinder output from all 47 species
AT4G17230 SCL13 SCARECROW-like 13 0.13 OrthoFinder output from all 47 species
Adi_g085312 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108349 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04153 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02325 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08305 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12229 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14420 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g10196 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g17653 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21753 PAT1 GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g51666 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05233 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05274 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01362 PAT1 GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g26689 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene36559.t1 PAT1, Aspi01Gene36559 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene48189.t1 PAT1, Aspi01Gene48189 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene64634.t1 PAT1, Aspi01Gene64634 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0051.g031398 SCL21 GRAS-type transcription factor & original description: CDS=1-1998 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g039020 PAT1 GRAS-type transcription factor & original description: CDS=1-2502 0.05 OrthoFinder output from all 47 species
Cba_g22814 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g59690 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G109900.1 PAT1, Ceric.01G109900 GRAS-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.14G087500.1 PAT1, Ceric.14G087500 GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G064200.1 PAT1, Ceric.26G064200 GRAS-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g00898 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g05689 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12997 PAT1 GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g03424 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03441 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19426 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02729 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g02799 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02859 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08580 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16560 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Gb_03123 PAT1 transcription factor (GRAS) 0.06 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.09 OrthoFinder output from all 47 species
LOC_Os01g65900.1 SCL1, LOC_Os01g65900 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
LOC_Os07g36170.2 PAT1, LOC_Os07g36170 transcription factor (GRAS) 0.12 OrthoFinder output from all 47 species
LOC_Os07g39470.1 PAT1, LOC_Os07g39470 transcription factor (GRAS) 0.13 OrthoFinder output from all 47 species
Len_g12269 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Len_g17559 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20939 PAT1 GRAS-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g18488 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g28608 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g30488 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10435549g0050 SCL1 transcription factor (GRAS) 0.06 OrthoFinder output from all 47 species
MA_9896333g0010 SCL1 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Msp_g10420 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g27471 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06251 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10124 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19162 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g10322 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g11761 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09018 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16566 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55042 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g064550.1.1 SCL1, Solyc04g064550 transcription factor (GRAS) 0.11 OrthoFinder output from all 47 species
Solyc05g054170.4.1 SCL13, Solyc05g054170 transcription factor (GRAS) 0.07 OrthoFinder output from all 47 species
Solyc06g035620.3.1 PAT1, Solyc06g035620 transcription factor (GRAS) 0.13 OrthoFinder output from all 47 species
Solyc07g063940.2.1 PAT1, Solyc07g063940 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc07g065270.1.1 PAT1, Solyc07g065270 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Solyc12g005340.3.1 PAT1, Solyc12g005340 transcription factor (GRAS) 0.12 OrthoFinder output from all 47 species
Spa_g05345 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07387 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g14334 PAT1 GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g15312 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g23112 PAT1 GRAS-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g46955 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14260 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g28749 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010646_P001 PAT1, Zm00001e010646 transcription factor (GRAS) 0.07 OrthoFinder output from all 47 species
Zm00001e031707_P001 SCL1, Zm00001e031707 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Zm00001e035384_P001 PAT1, Zm00001e035384 transcription factor (GRAS) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 166 335
No external refs found!