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  5. GSVIVT01004707001

GSVIVT01004707001


Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein


Gene families : OG0001407 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001407_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01004707001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00148170 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.16 OrthoFinder output from all 47 species
AT5G47480 No alias RGPR-related 0.14 OrthoFinder output from all 47 species
Adi_g020088 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.03 OrthoFinder output from all 47 species
Adi_g054382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18515 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.05 OrthoFinder output from all 47 species
Aev_g20694 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.02 OrthoFinder output from all 47 species
Ala_g05052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05053 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.03 OrthoFinder output from all 47 species
Ala_g35596 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18271 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.04 OrthoFinder output from all 47 species
Aob_g12494 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.03 OrthoFinder output from all 47 species
Aop_g05255 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s1873.g107629 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G071900.1 Ceric.06G071900 Sar1-GTPase-regulating protein *(Sec16) & original... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001215.21 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g24242 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.1 OrthoFinder output from all 47 species
Dde_g09502 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.03 OrthoFinder output from all 47 species
Gb_04674 No alias Sar1-GTPase-regulating protein (Sec16) 0.04 OrthoFinder output from all 47 species
LOC_Os02g01490.1 LOC_Os02g01490 Sar1-GTPase-regulating protein (Sec16) 0.09 OrthoFinder output from all 47 species
LOC_Os06g01650.1 LOC_Os06g01650 Sar1-GTPase-regulating protein (Sec16) 0.04 OrthoFinder output from all 47 species
Len_g21143 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g04293 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.06 OrthoFinder output from all 47 species
MA_10427360g0010 No alias Sar1-GTPase-regulating protein (Sec16) 0.03 OrthoFinder output from all 47 species
MA_10427360g0020 No alias Sar1-GTPase-regulating protein (Sec16) 0.06 OrthoFinder output from all 47 species
Mp1g19530.1 No alias Sar1-GTPase-regulating protein (Sec16) 0.11 OrthoFinder output from all 47 species
Msp_g13522 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.06 OrthoFinder output from all 47 species
Msp_g13550 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g03220 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.05 OrthoFinder output from all 47 species
Ore_g18247 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g16317 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g45058 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011231 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.03 OrthoFinder output from all 47 species
Sam_g24520 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.06 OrthoFinder output from all 47 species
Sam_g49181 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.11 OrthoFinder output from all 47 species
Smo442780 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder output from all 47 species
Smo446951 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Solyc08g007340.3.1 Solyc08g007340 Sar1-GTPase-regulating protein (Sec16) 0.09 OrthoFinder output from all 47 species
Solyc08g007360.3.1 Solyc08g007360 Sar1-GTPase-regulating protein (Sec16) 0.08 OrthoFinder output from all 47 species
Spa_g22205 No alias Sar1-GTPase-regulating protein *(Sec16) & original... 0.02 OrthoFinder output from all 47 species
Spa_g40855 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13175 No alias Sar1-GTPase-regulaTing protein *(Sec16) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e013404_P001 Zm00001e013404 Sar1-GTPase-regulating protein (Sec16) 0.02 OrthoFinder output from all 47 species
Zm00001e025399_P002 Zm00001e025399 Sar1-GTPase-regulating protein (Sec16) 0.09 OrthoFinder output from all 47 species
Zm00001e029805_P005 Zm00001e029805 Sar1-GTPase-regulating protein (Sec16) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR024298 ACE1_Sec16_Sec31 268 556
IPR024340 Sec16_CCD 90 208
No external refs found!