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  5. GSVIVT01003874001

GSVIVT01003874001 (SFD4, FADC, FAD6)


Aliases : SFD4, FADC, FAD6

Description : Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus


Gene families : OG0002742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003874001

Target Alias Description ECC score Gene Family Method Actions
Adi_g087305 SFD4, FADC, FAD6 delta-12/delta-15 fatty acid desaturase & original... 0.02 OrthoFinder output from all 47 species
Aop_g01297 SFD4, FADC, FAD6 delta-12/delta-15 fatty acid desaturase & original... 0.02 OrthoFinder output from all 47 species
Ehy_g03658 SFD4, FADC, FAD6 delta-12/delta-15 fatty acid desaturase & original... 0.02 OrthoFinder output from all 47 species
Gb_24358 SFD4, FADC, FAD6 omega-3/omega-6 fatty acid desaturase 0.03 OrthoFinder output from all 47 species
LOC_Os08g34220.1 SFD4, FADC,... omega-3/omega-6 fatty acid desaturase 0.02 OrthoFinder output from all 47 species
Len_g41148 SFD4, FADC, FAD6 delta-12/delta-15 fatty acid desaturase & original... 0.02 OrthoFinder output from all 47 species
Lfl_g07005 SFD4, FADC, FAD6 delta-12/delta-15 fatty acid desaturase & original... 0.05 OrthoFinder output from all 47 species
Solyc07g005510.3.1 SFD4, FADC,... omega-3/omega-6 fatty acid desaturase 0.07 OrthoFinder output from all 47 species
Spa_g19121 SFD4, FADC, FAD6 delta-12/delta-15 fatty acid desaturase & original... 0.03 OrthoFinder output from all 47 species
Tin_g03268 SFD4, FADC, FAD6 delta-12/delta-15 fatty acid desaturase & original... 0.04 OrthoFinder output from all 47 species
Zm00001e004091_P001 SFD4, FADC,... omega-3/omega-6 fatty acid desaturase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005804 FA_desaturase_dom 143 390
No external refs found!