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  5. GSVIVT01002125001

GSVIVT01002125001


Description : RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01002125001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00215280 evm_27.TU.AmTr_v1... RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species
AT5G47210 No alias Hyaluronan / mRNA binding family 0.1 OrthoFinder output from all 47 species
Adi_g025028 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Adi_g060796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117739 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Aev_g07778 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Ala_g01665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07181 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Aob_g20955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30074 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010039 No alias regulatory protein *(RGG) of mRNA quality control &... 0.07 OrthoFinder output from all 47 species
Azfi_s0208.g057973 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Cba_g17505 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Ceric.19G044900.1 Ceric.19G044900 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ceric.30G035000.1 Ceric.30G035000 regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.31 No alias No description available 0.06 OrthoFinder output from all 47 species
Ehy_g25280 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Len_g12236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13836 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Lfl_g02947 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
MA_9567870g0010 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.1 OrthoFinder output from all 47 species
Mp4g04410.1 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Msp_g10018 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Nbi_g22306 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g04627 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g20153 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Sam_g26127 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Spa_g31252 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Spa_g50119 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05938 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Zm00001e019955_P001 Zm00001e019955 RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 OrthoFinder output from all 47 species
Zm00001e026661_P002 Zm00001e026661 RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019084 Stm1-like_N 1 76
IPR006861 HABP4_PAIRBP1-bd 156 263
No external refs found!