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  5. Solyc12g098860.2.1

Solyc12g098860.2.1 (CHA18, CHR18, Solyc12g098860)


Aliases : CHA18, CHR18, Solyc12g098860

Description : chromatin remodeling factor (SMARCAL1)


Gene families : OG0002390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g098860.2.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT5G07810 No alias SNF2 domain-containing protein / helicase... 0.08 OrthoFinder output from all 47 species
Adi_g021948 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.02 OrthoFinder output from all 47 species
Ala_g21869 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.04 OrthoFinder output from all 47 species
Cre03.g199350 CHA18, CHR18 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
GSVIVT01007916001 No alias Chromatin organisation.chromatin remodeling... 0.11 OrthoFinder output from all 47 species
GSVIVT01017700001 CHA18, CHR18 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
LOC_Os07g40730.1 LOC_Os07g40730 chromatin remodeling factor (SMARCAL1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 220 459
IPR001650 Helicase_C 499 610
No external refs found!