1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g019140.3.1

Solyc12g019140.3.1 (Solyc12g019140)


Aliases : Solyc12g019140

Description : Polygalacturonase OS=Prunus persica (sp|p48979|pglr_prupe : 396.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 237.2)


Gene families : OG0008809 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008809_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g019140.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00135670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 OrthoFinder output from all 47 species
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.04 OrthoFinder output from all 47 species
LOC_Os01g66710.1 LOC_Os01g66710 Polygalacturonase OS=Prunus persica... 0.04 OrthoFinder output from all 47 species
Solyc12g019130.3.1 Solyc12g019130 Polygalacturonase OS=Prunus persica... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 51 367
No external refs found!