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  5. Solyc12g019110.3.1

Solyc12g019110.3.1 (EMB2247, Solyc12g019110)


Aliases : EMB2247, Solyc12g019110

Description : valine-tRNA ligase


Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g019110.3.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00143390 EMB2247,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
AT5G16715 EMB2247 ATP binding;valine-tRNA ligases;aminoacyl-tRNA... 0.19 OrthoFinder output from all 47 species
Adi_g013160 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Aev_g05503 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Ala_g39122 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g21612 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.08 OrthoFinder output from all 47 species
Azfi_s0001.g000362 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Cba_g18347 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Ceric.08G062000.1 EMB2247, Ceric.08G062000 EC_6.1 ligase forming carbon-oxygen bond & original... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.37 EMB2247 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Cre07.g350500 EMB2247 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.07 OrthoFinder output from all 47 species
Cre12.g537100 VALRS, TWN2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Dac_g01768 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Dde_g24253 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01030776001 EMB2247 Valine--tRNA ligase, chloroplastic/mitochondrial 2... 0.01 OrthoFinder output from all 47 species
Gb_39267 EMB2247 valine-tRNA ligase 0.07 OrthoFinder output from all 47 species
LOC_Os07g06940.1 EMB2247, LOC_Os07g06940 valine-tRNA ligase 0.04 OrthoFinder output from all 47 species
Len_g18059 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Lfl_g08398 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.09 OrthoFinder output from all 47 species
MA_374514g0010 EMB2247 Valine--tRNA ligase, chloroplastic/mitochondrial 2... 0.04 OrthoFinder output from all 47 species
Mp2g20730.1 EMB2247 valine-tRNA ligase 0.1 OrthoFinder output from all 47 species
Msp_g00710 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Nbi_g13320 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Nbi_g34796 VALRS, TWN2 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Pir_g04280 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Ppi_g56587 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014522 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g09052 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Spa_g22308 EMB2247 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Zm00001e011483_P001 EMB2247, Zm00001e011483 valine-tRNA ligase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0004832 valine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
BP GO:0006438 valyl-tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR002300 aa-tRNA-synth_Ia 8 364
IPR019499 Val-tRNA_synth_tRNA-bd 628 688
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 421 561
No external refs found!