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  5. Solyc10g080710.2.1

Solyc10g080710.2.1 (SYNC1 ARATH, SYNC1,...)


Aliases : SYNC1 ARATH, SYNC1, EMB2755, Solyc10g080710

Description : asparagine-tRNA ligase


Gene families : OG0001747 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g080710.2.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g014734 SYNC1 ARATH,... EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0359.g066868 SYNC1 ARATH,... EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Cre03.g193800 SYNC1 ARATH,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Mp1g06990.1 SYNC1 ARATH,... asparagine-tRNA ligase 0.03 OrthoFinder output from all 47 species
Ore_g30928 SYNC1 ARATH,... EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 47 123
IPR004364 Aa-tRNA-synt_II 311 573
IPR004364 Aa-tRNA-synt_II 145 207
No external refs found!