Solyc10g080660.3.1 (NCBP, Solyc10g080660)

Aliases : NCBP, Solyc10g080660

Description : RNA-cap-binding factor (4EHP)

Gene families : OG0007108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g080660.3.1
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AT5G18110	NCBP	novel cap-binding protein	0.04	OrthoFinder output from all 47 species
Aev_g21864	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g59031	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g05585	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0012.g012870	NCBP	RNA-cap-binding factor (4EHP) & original description: CDS=1-612	0.05	OrthoFinder output from all 47 species
GSVIVT01033412001	NCBP	Protein biosynthesis.translation initiation.mRNA...	0.04	OrthoFinder output from all 47 species
Pnu_g02350	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014097	NCBP	RNA-cap-binding factor (4EHP) & original description: CDS=162-899	0.03	OrthoFinder output from all 47 species
Sam_g06614	No alias	RNA-cap-binding factor (4EHP) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g10021	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006413	translational initiation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001040	TIF_eIF_4E	45	203

External Links

No external refs found!