Solyc09g008120.4.1 (Solyc09g008120)

Aliases : Solyc09g008120

Description : RNA helicase (Prp22)

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g008120.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00166450	evm_27.TU.AmTr_v1...	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00090p00083520	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
AMTR_s00110p00073830	ESP3, EMB2733,...	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
AT1G26370	No alias	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
AT1G27900	No alias	RNA helicase family protein	0.05	OrthoFinder output from all 47 species
AT2G35340	MEE29	helicase domain-containing protein	0.04	OrthoFinder output from all 47 species
AT2G47250	No alias	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
AT3G62310	No alias	RNA helicase family protein	0.06	OrthoFinder output from all 47 species
AT4G18465	No alias	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Adi_g008219	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g045408	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g060167	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g084485	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g107993	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g11422	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g14240	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g37436	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g11041	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.04G078700.1	Ceric.04G078700	not classified & original description: pacid=50630845...	0.03	OrthoFinder output from all 47 species
Ceric.21G075900.1	EMB3011, Ceric.21G075900	RNA helicase *(Prp16) & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000796.23	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.27	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
Cre07.g329150	No alias	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
Cre07.g349100	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Dac_g20233	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g13368	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g22478	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g07449	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g48013	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g14594	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g25246	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os01g11370.1	LOC_Os01g11370	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.05	OrthoFinder output from all 47 species
LOC_Os07g32430.1	EMB3011, LOC_Os07g32430	RNA helicase (Prp16)	0.02	OrthoFinder output from all 47 species
LOC_Os11g20554.1	LOC_Os11g20554	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Len_g09738	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g31554	No alias	RNA helicase *(Prp22) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g29092	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_4084g0010	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp4g02780.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Mp4g16380.1	ESP3, EMB2733	RNA helicase (Prp2)	0.04	OrthoFinder output from all 47 species
Mp7g03460.1	EMB3011	RNA helicase (Prp16)	0.03	OrthoFinder output from all 47 species
Msp_g14081	EMB3011	RNA helicase *(Prp16) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g07572	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g12800	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10558	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44705	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g07808	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Ppi_g17516	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011158	No alias	not classified & original description: CDS=170-2296	0.03	OrthoFinder output from all 47 species
Sam_g03727	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g06275	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g08957	No alias	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16823	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Sam_g25079	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g48742	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Tin_g02106	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Tin_g12928	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g28400	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g31207	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e016478_P002	Zm00001e016478	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Zm00001e022095_P001	ESP3, EMB2733,...	RNA helicase (Prp2)	0.02	OrthoFinder output from all 47 species
Zm00001e028404_P001	Zm00001e028404	RNA helicase (Prp22)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	HCCA
MF	GO:0008172	S-methyltransferase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0030832	regulation of actin filament length	IEP	HCCA
BP	GO:0030833	regulation of actin filament polymerization	IEP	HCCA
BP	GO:0032271	regulation of protein polymerization	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	HCCA
BP	GO:0032970	regulation of actin filament-based process	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0110053	regulation of actin filament organization	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	629	706
IPR007502	Helicase-assoc_dom	472	589
IPR001650	Helicase_C	277	407

External Links

No external refs found!

Solyc09g008120.4.1 (Solyc09g008120)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation