Solyc08g082530.4.1 (Solyc08g082530)

Aliases : Solyc08g082530

Description : Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana (sp|o22993|ftsi1_arath : 1197.0)

Gene families : OG0007422 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007422_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g082530.4.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00235220	evm_27.TU.AmTr_v1...	Probable inactive ATP-dependent zinc metalloprotease...	0.05	OrthoFinder output from all 47 species
AT4G23940	No alias	FtsH extracellular protease family	0.1	OrthoFinder output from all 47 species
Adi_g021129	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.05	OrthoFinder output from all 47 species
Als_g16163	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.02	OrthoFinder output from all 47 species
Aop_g13102	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.04	OrthoFinder output from all 47 species
Azfi_s0144.g051562	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.06	OrthoFinder output from all 47 species
Ceric.06G050800.1	Ceric.06G050800	component *(FtsHi) of protein translocation ATPase motor...	0.05	OrthoFinder output from all 47 species
Dcu_g01962	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.02	OrthoFinder output from all 47 species
Dde_g11289	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
GSVIVT01019239001	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.12	OrthoFinder output from all 47 species
Gb_20809	No alias	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
Lfl_g02382	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.07	OrthoFinder output from all 47 species
MA_10435856g0010	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.07	OrthoFinder output from all 47 species
Mp6g01370.1	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.22	OrthoFinder output from all 47 species
Msp_g13592	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.05	OrthoFinder output from all 47 species
Nbi_g04434	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.02	OrthoFinder output from all 47 species
Ore_g44793	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.06	OrthoFinder output from all 47 species
Ppi_g31581	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Sam_g13538	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.03	OrthoFinder output from all 47 species
Smo98591	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.11	OrthoFinder output from all 47 species
Tin_g11181	No alias	component *(FtsHi) of protein translocation ATPase motor...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	484	624
IPR041569	AAA_lid_3	648	689
IPR000642	Peptidase_M41	716	821

External Links

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Solyc08g082530.4.1 (Solyc08g082530)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation