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  5. Solyc07g053650.4.1

Solyc07g053650.4.1 (RPN1A, ATRPN1A, Solyc07g053650)


Aliases : RPN1A, ATRPN1A, Solyc07g053650

Description : regulatory component RPN1 of 26S proteasome


Gene families : OG0003700 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003700_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g053650.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242820 RPN1A, ATRPN1A,... Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
AT2G20580 RPN1A, ATRPN1A 26S proteasome regulatory subunit S2 1A 0.05 OrthoFinder output from all 47 species
AT4G28470 RPN1B, ATRPN1B 26S proteasome regulatory subunit S2 1B 0.04 OrthoFinder output from all 47 species
Adi_g022424 RPN1A, ATRPN1A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g022425 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Adi_g055914 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Aev_g10435 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ala_g02514 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Als_g23720 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g52439 RPN1A, ATRPN1A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03547 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cba_g59194 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ceric.33G015600.1 RPN1A, ATRPN1A,... regulatory component *(RPN1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020703.10 RPN1A, ATRPN1A Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020703.9 No alias 26S proteasome non-ATPase regulatory subunit 2 homolog A... 0.01 OrthoFinder output from all 47 species
Cre16.g676197 RPN1B, ATRPN1B Protein degradation.26S proteasome.regulatory... 0.08 OrthoFinder output from all 47 species
Dac_g15343 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Dcu_g06470 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.09 OrthoFinder output from all 47 species
Dde_g02349 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ehy_g09229 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020602001 RPN1A, ATRPN1A Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
Gb_05383 RPN1A, ATRPN1A regulatory component RPN1 of 26S proteasome 0.08 OrthoFinder output from all 47 species
LOC_Os02g05340.1 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.1 OrthoFinder output from all 47 species
LOC_Os09g15750.1 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Lfl_g05692 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.1 OrthoFinder output from all 47 species
MA_42234g0010 RPN1A, ATRPN1A 26S proteasome non-ATPase regulatory subunit 2 homolog A... 0.04 OrthoFinder output from all 47 species
Mp5g07110.1 RPN1A, ATRPN1A regulatory component RPN1 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Msp_g04528 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Pir_g09801 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010144 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Sam_g09731 No alias regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Smo228162 RPN1A, ATRPN1A Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Spa_g10515 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Spa_g49868 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Tin_g10608 RPN1A, ATRPN1A regulatory component *(RPN1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e013651_P001 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Zm00001e025223_P001 RPN1A, ATRPN1A,... regulatory component RPN1 of 26S proteasome 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002015 Proteasome/cyclosome_rpt 452 487
IPR002015 Proteasome/cyclosome_rpt 489 518
IPR040892 RPN1_N 53 355
IPR041433 RPN1_C 839 892
No external refs found!