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Aliases : ELF8, VIP6, Solyc07g041510
Description : component VIP6/CTR9 of PAF1C transcription initiation and elongation complex
Gene families : OG0004869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004869_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G06210 | ELF8, VIP6 | binding | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g05510 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g28871 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g10877 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.21G032800.1 | ELF8, VIP6,... | not classified & original description: pacid=50603729... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.21G032900.1 | Ceric.21G032900 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.07 | OrthoFinder output from all 47 species | |
| Cre03.g189605 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g14157 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g06197 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01015096001 | ELF8, VIP6 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_17412 | ELF8, VIP6 | component VIP6/CTR9 of PAF1C transcription initiation... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os07g29360.1 | ELF8, VIP6,... | component VIP6/CTR9 of PAF1C transcription initiation... | 0.08 | OrthoFinder output from all 47 species | |
| Lfl_g02407 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.04 | OrthoFinder output from all 47 species | |
| MA_202g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Mp5g24200.1 | ELF8, VIP6 | component VIP6/CTR9 of PAF1C transcription initiation... | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g37395 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g48264 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.09 | OrthoFinder output from all 47 species | |
| Sam_g19463 | No alias | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.03 | OrthoFinder output from all 47 species | |
| Smo149863 | ELF8, VIP6 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g12107 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g10977 | ELF8, VIP6 | component *(VIP6/CTR9) of PAF1C transcription initiation... | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000723 | telomere maintenance | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
| MF | GO:0004525 | ribonuclease III activity | IEP | HCCA |
| MF | GO:0005049 | nuclear export signal receptor activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| CC | GO:0016459 | myosin complex | IEP | HCCA |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0032200 | telomere organization | IEP | HCCA |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| MF | GO:0044877 | protein-containing complex binding | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140104 | molecular carrier activity | IEP | HCCA |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |