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  5. Solyc07g018360.3.1

Solyc07g018360.3.1 (emb2726, Solyc07g018360)


Aliases : emb2726, Solyc07g018360

Description : EF-Ts translation elongation factor


Gene families : OG0003250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g018360.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00129480 emb2726,... Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
AT4G29060 emb2726 elongation factor Ts family protein 0.16 OrthoFinder output from all 47 species
Adi_g053355 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Adi_g118105 emb2726 translation elongation factor *(EF-Ts) & original... 0.05 OrthoFinder output from all 47 species
Aev_g28882 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Ala_g13148 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Ala_g21504 emb2726 translation elongation factor *(EF-Ts) & original... 0.05 OrthoFinder output from all 47 species
Ala_g30187 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Aob_g08834 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Cba_g71569 emb2726 translation elongation factor *(EF-Ts) & original... 0.05 OrthoFinder output from all 47 species
Cba_g78300 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Ceric.03G081000.1 emb2726, Ceric.03G081000 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.56 emb2726 Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Cre12.g519180 emb2726 Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g05556 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Dde_g06930 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05564 emb2726 translation elongation factor *(EF-Ts) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g26260 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01015347001 emb2726 Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Gb_29672 emb2726 EF-Ts translation elongation factor 0.04 OrthoFinder output from all 47 species
LOC_Os12g35630.1 emb2726, LOC_Os12g35630 EF-Ts translation elongation factor 0.12 OrthoFinder output from all 47 species
Len_g59815 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
MA_10436165g0010 emb2726 EF-Ts translation elongation factor 0.06 OrthoFinder output from all 47 species
Mp2g23510.1 emb2726 EF-Ts translation elongation factor 0.05 OrthoFinder output from all 47 species
Nbi_g14225 emb2726 translation elongation factor *(EF-Ts) & original... 0.07 OrthoFinder output from all 47 species
Ore_g00299 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Ore_g08953 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Pir_g07418 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g13399 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g29843 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Smo60716 emb2726 Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Spa_g11112 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Spa_g21728 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Tin_g03798 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e010912_P001 emb2726, Zm00001e010912 EF-Ts translation elongation factor 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003746 translation elongation factor activity IEA Interproscan
BP GO:0006414 translational elongation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 147 217
IPR003029 S1_domain 260 323
IPR014039 Transl_elong_EFTs/EF1B_dimer 652 794
IPR014039 Transl_elong_EFTs/EF1B_dimer 891 1034
No external refs found!