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  5. Solyc07g015860.3.1

Solyc07g015860.3.1 (ATDEF1, PDF1A, Solyc07g015860)


Aliases : ATDEF1, PDF1A, Solyc07g015860

Description : formylmethionine deformylase (PDF)


Gene families : OG0007852 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007852_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g015860.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00081p00136350 ATDEF1, PDF1A,... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
GSVIVT01017280001 ATDEF1, PDF1A Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Gb_04790 ATDEF1, PDF1A formylmethionine deformylase (PDF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g37510.1 ATDEF1, PDF1A,... formylmethionine deformylase (PDF) 0.05 OrthoFinder output from all 47 species
MA_395770g0010 ATDEF1, PDF1A formylmethionine deformylase (PDF) 0.02 OrthoFinder output from all 47 species
Pir_g00884 ATDEF1, PDF1A EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Sam_g25193 No alias EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR023635 Peptide_deformylase 90 255
No external refs found!