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  5. Solyc06g083420.3.1

Solyc06g083420.3.1 (Solyc06g083420)


Aliases : Solyc06g083420

Description : component EAF1 of NuA4 histone acetyltransferase complex


Gene families : OG0001880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083420.3.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248140 No alias Chromatin modification-related protein EAF1 B... 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00023420 evm_27.TU.AmTr_v1... Chromatin modification-related protein EAF1 A... 0.03 OrthoFinder output from all 47 species
AT3G24870 No alias Helicase/SANT-associated, DNA binding protein 0.05 OrthoFinder output from all 47 species
AT3G24880 No alias Helicase/SANT-associated, DNA binding protein 0.13 OrthoFinder output from all 47 species
Adi_g107358 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.05 OrthoFinder output from all 47 species
Adi_g112779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04897 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.02 OrthoFinder output from all 47 species
Aop_g08156 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.04 OrthoFinder output from all 47 species
Aspi01Gene02964.t1 Aspi01Gene02964 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009719 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.04 OrthoFinder output from all 47 species
Ceric.1Z107100.1 Ceric.1Z107100 component *(EAF1) of NuA4 histone acetyltransferase... 0.11 OrthoFinder output from all 47 species
Dac_g06715 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.02 OrthoFinder output from all 47 species
Dcu_g44993 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.09 OrthoFinder output from all 47 species
Ehy_g16159 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.03 OrthoFinder output from all 47 species
GSVIVT01028685001 No alias Chromatin modification-related protein EAF1 A... 0.12 OrthoFinder output from all 47 species
Gb_03424 No alias component EAF1 of NuA4 histone acetyltransferase complex 0.07 OrthoFinder output from all 47 species
Gb_31226 No alias component EAF1 of NuA4 histone acetyltransferase complex 0.07 OrthoFinder output from all 47 species
LOC_Os05g51550.1 LOC_Os05g51550 Chromatin modification-related protein EAF1 B... 0.02 OrthoFinder output from all 47 species
LOC_Os08g08000.1 LOC_Os08g08000 component EAF1 of NuA4 histone acetyltransferase complex 0.04 OrthoFinder output from all 47 species
Len_g14156 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.08 OrthoFinder output from all 47 species
MA_118641g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_16444g0030 No alias component EAF1 of NuA4 histone acetyltransferase complex 0.04 OrthoFinder output from all 47 species
MA_31176g0010 No alias component EAF1 of NuA4 histone acetyltransferase complex 0.04 OrthoFinder output from all 47 species
Mp2g02900.1 No alias component EAF1 of NuA4 histone acetyltransferase complex 0.07 OrthoFinder output from all 47 species
Msp_g36976 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.06 OrthoFinder output from all 47 species
Nbi_g05491 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.03 OrthoFinder output from all 47 species
Ore_g18801 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.04 OrthoFinder output from all 47 species
Pir_g12255 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.03 OrthoFinder output from all 47 species
Pp3c4_31630V3.1 Pp3c4_31630 Helicase/SANT-associated, DNA binding protein 0.01 OrthoFinder output from all 47 species
Ppi_g42118 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021615 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.05 OrthoFinder output from all 47 species
Sam_g36096 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.06 OrthoFinder output from all 47 species
Smo424802 No alias Chromatin modification-related protein EAF1 B... 0.02 OrthoFinder output from all 47 species
Spa_g42104 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.03 OrthoFinder output from all 47 species
Tin_g13754 No alias component *(EAF1) of NuA4 histone acetyltransferase... 0.03 OrthoFinder output from all 47 species
Zm00001e020520_P002 Zm00001e020520 component EAF1 of NuA4 histone acetyltransferase complex 0.11 OrthoFinder output from all 47 species
Zm00001e020521_P001 Zm00001e020521 component EAF1 of NuA4 histone acetyltransferase complex 0.05 OrthoFinder output from all 47 species
Zm00001e026671_P001 Zm00001e026671 component EAF1 of NuA4 histone acetyltransferase complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014012 HSA_dom 594 628
No external refs found!