1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g076050.4.1

Solyc06g076050.4.1 (XBAT31, Solyc06g076050)


Aliases : XBAT31, Solyc06g076050

Description : RING-HC-class E3 ligase


Gene families : OG0000851 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000851_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g076050.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g010342 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08783 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51936.t1 XBAT31, Aspi01Gene51936 E3 ubiquitin ligase *(XBAT3) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g17329 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.07G072800.1 XBAT31, Ceric.07G072800 E3 ubiquitin ligase *(XBAT3) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g19831 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g43547 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03908 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24788 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08553 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12579 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08392 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08389 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015667 XBAT31 not classified & original description: CDS=1-597 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0270.g027011 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: CDS=728-2197 0.03 OrthoFinder output from all 47 species
Spa_g12896 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04012 XBAT31 E3 ubiquiTin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e018493_P002 XBAT31, Zm00001e018493 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e027635_P001 XBAT31, Zm00001e027635 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e029646_P004 XBAT31, Zm00001e029646 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 195 225
IPR020683 DUF3447 112 182
IPR020683 DUF3447 15 109
No external refs found!