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  5. Solyc06g073780.4.1

Solyc06g073780.4.1 (TTN7, SMC3, Solyc06g073780)


Aliases : TTN7, SMC3, Solyc06g073780

Description : component SMC3/TTN7 of cohesin regulator complex


Gene families : OG0003981 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003981_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g073780.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00198530 TTN7, SMC3,... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00198810 TTN7, SMC3,... Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
AT2G27170 TTN7, SMC3 Structural maintenance of chromosomes (SMC) family protein 0.1 OrthoFinder output from all 47 species
Adi_g076982 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.05 OrthoFinder output from all 47 species
Als_g10466 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Aob_g19956 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0147.g053026 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Ceric.05G021600.1 TTN7, SMC3,... component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000711.46 TTN7, SMC3 Structural maintenance of chromosomes protein 3... 0.02 OrthoFinder output from all 47 species
Cre10.g445650 TTN7, SMC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
Dac_g05785 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g09520 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01033181001 TTN7, SMC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
LOC_Os02g04040.1 TTN7, SMC3,... component SMC3/TTN7 of cohesin regulator complex 0.08 OrthoFinder output from all 47 species
LOC_Os02g04050.1 TTN7, SMC3,... component SMC3/TTN7 of cohesin regulator complex 0.06 OrthoFinder output from all 47 species
MA_10427183g0010 TTN7, SMC3 component SMC3/TTN7 of cohesin regulator complex 0.02 OrthoFinder output from all 47 species
Mp5g09700.1 TTN7, SMC3 component SMC3/TTN7 of cohesin regulator complex 0.08 OrthoFinder output from all 47 species
Nbi_g04455 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Sam_g08063 No alias component *(SMC3/TTN7) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Spa_g10771 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e032592_P001 TTN7, SMC3,... component SMC3/TTN7 of cohesin regulator complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 2 1176
IPR010935 SMC_hinge 522 633
No external refs found!