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  5. Solyc05g056510.3.1

Solyc05g056510.3.1 (Solyc05g056510)


Aliases : Solyc05g056510

Description : no hits & (original description: none)


Gene families : OG0002724 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002724_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g056510.3.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT5G62270 No alias BEST Arabidopsis thaliana protein match is:... 0.04 OrthoFinder output from all 47 species
Aev_g34188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05478 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0501.g073884 No alias not classified & original description: CDS=1-1464 0.02 OrthoFinder output from all 47 species
Ceric.30G068000.1 Ceric.30G068000 not classified & original description: pacid=50609099... 0.03 OrthoFinder output from all 47 species
Dde_g25744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g05070.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g17740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019545_P002 Zm00001e019545 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021036 Ribosomal_S35_mit 137 253
No external refs found!