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  5. Solyc05g007950.4.1

Solyc05g007950.4.1 (ATRNS1, RNS1, Solyc05g007950)


Aliases : ATRNS1, RNS1, Solyc05g007950

Description : Extracellular ribonuclease LE OS=Solanum lycopersicum (sp|p80022|rnle_sollc : 447.0)


Gene families : OG0001771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g007950.4.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00262550 evm_27.TU.AmTr_v1... Extracellular ribonuclease LE OS=Solanum lycopersicum 0.04 OrthoFinder output from all 47 species
AMTR_s00064p00084600 evm_27.TU.AmTr_v1... Ribonuclease 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G26820 RNS3 ribonuclease 3 0.04 OrthoFinder output from all 47 species
Aop_g15509 No alias T2-type RNase *(RNS) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18235 No alias T2-type RNase *(RNS) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_30836 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os07g43670.1 ATRNS1, RNS1,... Ribonuclease 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os08g33710.1 RNS3, LOC_Os08g33710 Extracellular ribonuclease LE OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
MA_95383g0020 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp2g08570.1 ATRNS1, RNS1 Ribonuclease 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g03541 ATRNS1, RNS1 T2-type RNase *(RNS) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g005640.3.1 Solyc04g005640 Intracellular ribonuclease LX OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Zm00001e004122_P001 RNS3, Zm00001e004122 Ribonuclease 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0033897 ribonuclease T2 activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001568 RNase_T2-like 29 213
No external refs found!