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  5. Solyc04g080340.3.1

Solyc04g080340.3.1 (Solyc04g080340)


Aliases : Solyc04g080340

Description : S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana (sp|q8rxn5|tyw1_arath : 908.0)


Gene families : OG0006618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006618_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc04g080340.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G75200 No alias flavodoxin family protein / radical SAM domain-containing protein 0.04 OrthoFinder output from all 47 species
Ceric.05G054200.1 Ceric.05G054200 tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01009707001 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.03 OrthoFinder output from all 47 species
LOC_Os03g56390.1 LOC_Os03g56390 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.05 OrthoFinder output from all 47 species
Mp5g22650.1 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.03 OrthoFinder output from all 47 species
Zm00001e005848_P001 Zm00001e005848 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0010181 FMN binding IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008254 Flavodoxin/NO_synth 56 197
IPR013917 tRNA_wybutosine-synth 527 590
IPR007197 rSAM 344 521
No external refs found!