1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g051580.4.1

Solyc04g051580.4.1 (SAMT1, SAMC1, Solyc04g051580)


Aliases : SAMT1, SAMC1, Solyc04g051580

Description : solute transporter (MTCC)


Gene families : OG0003529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003529_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g051580.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT4G39460 SAMT1, SAMC1 S-adenosylmethionine carrier 1 0.04 OrthoFinder output from all 47 species
Adi_g091771 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13218 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043240 SAMT1, SAMC1 solute transporter *(MTCC) & original description: CDS=1-1059 0.03 OrthoFinder output from all 47 species
Ceric.23G040600.1 SAMT1, SAMC1,... solute transporter *(MTCC) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021612.59 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.02 OrthoFinder output from all 47 species
Cre06.g286250 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.07 OrthoFinder output from all 47 species
Ehy_g00868 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01022254001 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.1 OrthoFinder output from all 47 species
LOC_Os05g29860.2 SAMT1, SAMC1,... solute transporter (MTCC) 0.12 OrthoFinder output from all 47 species
Mp8g05870.1 SAMT1, SAMC1 solute transporter (MTCC) 0.09 OrthoFinder output from all 47 species
Ore_g08280 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25840 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19597 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c12_10690V3.1 SAMT1, SAMC1,... S-adenosylmethionine carrier 1 0.01 OrthoFinder output from all 47 species
Sam_g14466 No alias solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Smo146160 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.05 OrthoFinder output from all 47 species
Spa_g16484 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12648 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015731_P001 SAMT1, SAMC1,... solute transporter (MTCC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018108 Mitochondrial_sb/sol_carrier 230 316
IPR018108 Mitochondrial_sb/sol_carrier 57 130
IPR018108 Mitochondrial_sb/sol_carrier 135 215
No external refs found!