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  5. Solyc04g005040.1.1

Solyc04g005040.1.1 (Solyc04g005040)


Aliases : Solyc04g005040

Description : Matrixin-type metalloprotease


Gene families : OG0002614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g005040.1.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00201730 MMP,... Protein degradation.peptidase families.metallopeptidase... 0.13 OrthoFinder output from all 47 species
AMTR_s00106p00141160 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.metallopeptidase... 0.05 OrthoFinder output from all 47 species
AT1G24140 No alias Matrixin family protein 0.08 OrthoFinder output from all 47 species
Adi_g060237 MMP EC_3.4 hydrolase acting on peptide bond (peptidase) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0187.g056745 No alias EC_3.4 hydrolase acting on peptide bond (peptidase) &... 0.04 OrthoFinder output from all 47 species
Ehy_g30544 No alias EC_3.4 hydrolase acting on peptide bond (peptidase) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01018206001 No alias Protein degradation.peptidase families.metallopeptidase... 0.03 OrthoFinder output from all 47 species
GSVIVT01020151001 MMP Protein degradation.peptidase families.metallopeptidase... 0.1 OrthoFinder output from all 47 species
GSVIVT01032544001 No alias Protein degradation.peptidase families.metallopeptidase... 0.03 OrthoFinder output from all 47 species
Gb_39954 MMP Matrixin-type metalloprotease 0.03 OrthoFinder output from all 47 species
Gb_39955 MMP Matrixin-type metalloprotease 0.03 OrthoFinder output from all 47 species
LOC_Os02g50730.1 MMP, LOC_Os02g50730 Matrixin-type metalloprotease 0.06 OrthoFinder output from all 47 species
LOC_Os06g13180.1 MMP, LOC_Os06g13180 Matrixin-type metalloprotease 0.08 OrthoFinder output from all 47 species
Len_g04709 MMP EC_3.4 hydrolase acting on peptide bond (peptidase) &... 0.02 OrthoFinder output from all 47 species
MA_10426152g0010 No alias Matrixin-type metalloprotease 0.05 OrthoFinder output from all 47 species
MA_364411g0010 No alias Matrixin-type metalloprotease 0.01 OrthoFinder output from all 47 species
Tin_g08223 MMP EC_3.4 hydrolase acTing on peptide bond (peptidase) &... 0.03 OrthoFinder output from all 47 species
Zm00001e015780_P001 MMP, Zm00001e015780 Matrixin-type metalloprotease 0.03 OrthoFinder output from all 47 species
Zm00001e036059_P001 MMP, Zm00001e036059 Matrixin-type metalloprotease 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0031012 extracellular matrix IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 61 117
IPR001818 Pept_M10_metallopeptidase 154 317
No external refs found!