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  5. Solyc03g119530.3.1

Solyc03g119530.3.1 (LBD41, Solyc03g119530)


Aliases : LBD41, Solyc03g119530

Description : transcription factor (AS2/LOB)


Gene families : OG0001073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119530.3.1
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00088960 LBD41,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
AT1G67100 LBD40 LOB domain-containing protein 40 0.04 OrthoFinder output from all 47 species
AT3G02550 LBD41 LOB domain-containing protein 41 0.09 OrthoFinder output from all 47 species
Adi_g024595 LBD38 AS2/LOB-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g036525 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g048099 LBD39 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08245 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20695 LBD37, ASL39 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07731 LBD38 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38372.t1 LBD38, Aspi01Gene38372 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0059.g034501 LBD38 AS2/LOB-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Cba_g07413 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13473 LBD38 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G070700.1 LBD38, Ceric.08G070700 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01008284001 LBD40 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.12 OrthoFinder output from all 47 species
GSVIVT01031035001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.15 OrthoFinder output from all 47 species
Gb_36942 LBD40 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species
Gb_36943 LBD40 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species
Lfl_g26418 LBD39 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14153 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001981_P001 LBD41, Zm00001e001981 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e005129_P001 LBD37, ASL39,... transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e027415_P001 LBD41, Zm00001e027415 transcription factor (AS2/LOB) 0.1 OrthoFinder output from all 47 species
Zm00001e027417_P001 LBD41, Zm00001e027417 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e032150_P001 LBD41, Zm00001e032150 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 4 102
No external refs found!